Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009728.1_98601_100250_F

Intron Information:

Intron Rank:

125499

Intron Class:

major

Intron Phase:

Intron Coordinates:

98601 - 100250

Intron Length:

1650

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTAAGCCTT

5'SS Class:

strong_major

3'SS Sequence:

CTCATCCCACCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

GATATTTTAATG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.74

73.1

43.9

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

67.4

0.39

0.9

59.3

36.8

Minor 5ss

44.3

-0.6

3.2

66.5

44.4

Minor BPS

58.3

0.12

1.4

57.46

38.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017621

Chromosome:

PEDO01009728.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048407

98471 - 109238

10768

ENSAPLT00000035630

98471 - 109238

10768

ENSAPLT00000025962

98471 - 109238

10768