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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009754.1_209_315_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
209 - 315
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTACTGCTC
5'SS Class:
major
3'SS Sequence:
CTTTCCCTCAGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTCCCTCAGAG
Flanking Amino Acid:
SYLVTLNVEVRDSGSHPDVS
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.2
0.24
1.2
52.1
44.8
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
59.9
0.22
1.7
68.5
31.9
Minor 5ss
34.8
-1.7
3.6
51
45.7
Minor BPS
49.4
-0.1
2
63.15
44

Associated Gene:

Gene:
COMMD3
Ensembl Gene ID:
ENSAPLG00000013438
Chromosome:
PEDO01009754.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013984
27 - 1561
1535