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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009754.1_378_462_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
378 - 462
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCTCA
5'SS Class:
major
3'SS Sequence:
GTTTTTAATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTGTTTTTAATT
Flanking Amino Acid:
VSWRLEYQIKTNQLHKTYQP
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
70.5
36.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
76.5
0.6
0.9
75.5
38.6
Minor 5ss
44.2
-0.6
2.8
57.5
46.7
Minor BPS
78.1
0.96
1
86.75
33.6

Associated Gene:

Gene:
COMMD3
Ensembl Gene ID:
ENSAPLG00000013438
Chromosome:
PEDO01009754.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013984
27 - 1561
1535