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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009754.1_524_844_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
524 - 844
Intron Length:
321

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAC
U12 Branch Point Sequence:
GCTTAGGGAACT
Flanking Amino Acid:
NKDALEILLGSIGRSPLHIT
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
81.4
32.7
Major BPS
71.4
0.53
1.2
63.4
44
Major PPT
83.9
0.76
0.9
81.2
36.5
Minor 5ss
33
-1.9
3.5
48.2
47.9
Minor BPS
39.7
-0.7
2.6
62.42
47

Associated Gene:

Gene:
COMMD3
Ensembl Gene ID:
ENSAPLG00000013438
Chromosome:
PEDO01009754.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013984
27 - 1561
1535