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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009762.1_1510_1863_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1510 - 1863
Intron Length:
354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CCCTCTTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGGTGAC
U12 Branch Point Sequence:
GGTGACAGAGCC
Flanking Amino Acid:
RQRVLQLETQGQIQRTVLGR
Intron Amino Acid Position:
604

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
72.2
39.5
Major BPS
48.9
-0
1.3
40.5
41.4
Major PPT
74.4
0.55
0.9
71.4
32.9
Minor 5ss
29.5
-2.4
3.4
39.1
46.7
Minor BPS
38.4
-0.9
2
47.45
40.9

Associated Gene:

Gene:
EVI5L
Ensembl Gene ID:
ENSAPLG00000014793
Chromosome:
PEDO01009762.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022397
463 - 8836
8374
ENSAPLT00000018329
463 - 8836
8374
ENSAPLT00000015443
21 - 8878
8858
ENSAPLT00000044718
21 - 8836
8816