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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009762.1_2017_2430_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2017 - 2430
Intron Length:
414

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCCA
5'SS Class:
strong_major
3'SS Sequence:
CCTCTGGGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCAAC
U12 Branch Point Sequence:
AGTCCCAACACC
Flanking Amino Acid:
QVKDLSDSWQAGRAGGRWKE
Intron Amino Acid Position:
553

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.4
38.2
Major BPS
49.7
-0
1.3
58.6
35.9
Major PPT
66.6
0.37
1
60.2
40.4
Minor 5ss
25.6
-2.8
3
30.5
42.8
Minor BPS
42.8
-0.5
2.2
56.2
41.7

Associated Gene:

Gene:
EVI5L
Ensembl Gene ID:
ENSAPLG00000014793
Chromosome:
PEDO01009762.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022397
463 - 8836
8374
ENSAPLT00000018329
463 - 8836
8374
ENSAPLT00000015443
21 - 8878
8858
ENSAPLT00000044718
21 - 8836
8816