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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009762.1_5055_5182_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5055 - 5182
Intron Length:
128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTGAT
U12 Branch Point Sequence:
TCTTCCCCAATT
Flanking Amino Acid:
KEMEEQIEIKRLRTENRLLK
Intron Amino Acid Position:
387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
65.8
0.39
1.2
57.3
41.7
Major PPT
81.5
0.71
0.8
73.9
36.1
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
60.6
0.41
1.9
81.02
40.9

Associated Gene:

Gene:
EVI5L
Ensembl Gene ID:
ENSAPLG00000014793
Chromosome:
PEDO01009762.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044718
21 - 8836
8816
ENSAPLT00000022397
463 - 8836
8374
ENSAPLT00000018329
463 - 8836
8374
ENSAPLT00000015443
21 - 8878
8858