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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009762.1_6022_6150_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6022 - 6150
Intron Length:
129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACGGGG
5'SS Class:
major
3'SS Sequence:
GCCATCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGGTGAC
U12 Branch Point Sequence:
GGAAAGGTGACG
Flanking Amino Acid:
TRVFDIFMYEGLEIVFRVGM
Intron Amino Acid Position:
304

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.2
58.7
46.2
Major BPS
48.9
-0
1.3
40.5
41.4
Major PPT
65.3
0.34
0.9
57.8
33.1
Minor 5ss
34.2
-1.8
3.6
46.8
48.5
Minor BPS
33
-1.4
2.4
34.64
39.3

Associated Gene:

Gene:
EVI5L
Ensembl Gene ID:
ENSAPLG00000014793
Chromosome:
PEDO01009762.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044718
21 - 8836
8816
ENSAPLT00000022397
463 - 8836
8374
ENSAPLT00000018329
463 - 8836
8374
ENSAPLT00000015443
21 - 8878
8858