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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009762.1_7656_7739_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7656 - 7739
Intron Length:
84

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGGGGG
5'SS Class:
major
3'SS Sequence:
CATTTCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GGTTTTTCACCC
Flanking Amino Acid:
WRKKKEKLLKELIRKGIPHH
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.1
55
44.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
77.9
0.63
0.8
69.7
36.4
Minor 5ss
22.1
-3.2
3.4
28.8
43.7
Minor BPS
48.2
-0.1
1.8
59.47
39.7

Associated Gene:

Gene:
EVI5L
Ensembl Gene ID:
ENSAPLG00000014793
Chromosome:
PEDO01009762.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044718
21 - 8836
8816
ENSAPLT00000022397
463 - 8836
8374
ENSAPLT00000018329
463 - 8836
8374
ENSAPLT00000015443
21 - 8878
8858