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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009762.1_7930_8687_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7930 - 8687
Intron Length:
758

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGCCCC
5'SS Class:
major
3'SS Sequence:
TCCGTCTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTAAC
U12 Branch Point Sequence:
TGGGGGCTAACT
Flanking Amino Acid:
ELLAKLEEQNRLLEADSKSM
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.56
1
57.1
42.2
Major BPS
51.7
0.04
1.3
55.3
40.3
Major PPT
78.8
0.65
0.8
72.7
32.1
Minor 5ss
34.2
-1.8
3
44.2
43.2
Minor BPS
40.1
-0.6
2.6
60.87
48.4

Associated Gene:

Gene:
EVI5L
Ensembl Gene ID:
ENSAPLG00000014793
Chromosome:
PEDO01009762.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018329
463 - 8836
8374
ENSAPLT00000015443
21 - 8878
8858
ENSAPLT00000044718
21 - 8836
8816
ENSAPLT00000022397
463 - 8836
8374