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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009779.1_534_4013_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
534 - 4013
Intron Length:
3480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGCCCGGA
5'SS Class:
weak_major
3'SS Sequence:
CGCCACCACACAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CCTCTAT
U12 Branch Point Sequence:
TCCCCAGGGACA
Flanking Amino Acid:
AKEPMELVVRPLPTHLPETP
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.8
0.02
1.2
41.4
41.8
Major BPS
49.5
-0
1.3
50.1
43.7
Major PPT
57.7
0.17
0.9
49.5
32.8
Minor 5ss
34.3
-1.8
3.5
38.1
46.8
Minor BPS
39.4
-0.8
2.2
49.66
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000677
Chromosome:
PEDO01009779.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000651
342 - 4416
4075