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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009780.1_189_337_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
189 - 337
Intron Length:
149

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TGG|GCGGAGCAG
5'SS Class:
weak_major
3'SS Sequence:
AGCTGCCCCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTCAG
U12 Branch Point Sequence:
CCTCCCCTCAGA
Flanking Amino Acid:
GLLLLLLGVLAAPVPAEPHS
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53
0.07
1.2
39.2
39
Major BPS
48.4
-0.1
1.5
56.9
40.5
Major PPT
64
0.32
0.9
58.8
37.7
Minor 5ss
11.8
-4.4
3.5
10.3
28.5
Minor BPS
42.6
-0.5
2.2
52.88
45.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030332
Chromosome:
PEDO01009780.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010767
113 - 1559
1447