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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009780.1_620_1281_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
620 - 1281
Intron Length:
662

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGAGCA
5'SS Class:
major
3'SS Sequence:
CATTGACTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTCAT
U12 Branch Point Sequence:
CCCTCATTGACT
Flanking Amino Acid:
TLRERYNQSRGSHTVQHMFG
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
64.8
35.2
Major BPS
70
0.5
1.1
71.2
35.2
Major PPT
75.3
0.57
0.9
70.4
40
Minor 5ss
24.8
-2.9
3
22.4
37
Minor BPS
60.5
0.41
1.7
71.98
45.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030332
Chromosome:
PEDO01009780.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010767
113 - 1559
1447