Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009798.1_14800_16489_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

14800 - 16489

Intron Length:

1690

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGATGG

5'SS Class:

strong_major

3'SS Sequence:

GAGCTGGGGAAAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CCCCGAG

U12 Branch Point Sequence:

TGGCCCCGAGCT

Flanking Amino Acid:

GLGVYLFRKQACPGLSSAPD

Intron Amino Acid Position:

274

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.1

0.92

0.9

72.5

39.9

Major BPS

38.1

-0.7

1.4

29.4

34.2

Major PPT

43.3

-0.3

1.2

32.2

40.2

Minor 5ss

37.3

-1.4

47.6

47.9

Minor BPS

45.2

-0.2

64.62

44.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024624

Chromosome:

PEDO01009798.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041577

8521 - 17172

8652