About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009798.1_26455_26934_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26455 - 26934
Intron Length:
480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
ACTCTTCCCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTCAA
U12 Branch Point Sequence:
CCTCCCCAAGTC
Flanking Amino Acid:
DEAIVELEVAAIGADPHLSL
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1.1
71.7
38.6
Major BPS
59
0.23
1.1
61.4
36.2
Major PPT
76.4
0.59
0.8
73.7
30.6
Minor 5ss
29.4
-2.4
2.9
36
40.7
Minor BPS
40.5
-0.7
2
47.96
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023297
Chromosome:
PEDO01009798.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029073
25957 - 30106
4150