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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009798.1_37238_37363_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37238 - 37363
Intron Length:
126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCATTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCCCTTTCATT
Flanking Amino Acid:
ARLDEQAAELENQAAELGKS
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
76.2
39.9
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
82.3
0.73
0.7
77.6
29.8
Minor 5ss
38.3
-1.3
3
45.5
42.6
Minor BPS
59.2
0.37
1.7
76.64
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024291
Chromosome:
PEDO01009798.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044110
34012 - 38823
4812