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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009798.1_47457_48795_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47457 - 48795
Intron Length:
1339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCATTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTCTCTTTCATT
Flanking Amino Acid:
GLGVYLFRKQEKQAAELAWR
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.7
43.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
82.3
0.73
0.7
77.6
29.8
Minor 5ss
43.2
-0.7
2.9
55.9
48.3
Minor BPS
66.9
0.61
1.7
82.98
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023197
Chromosome:
PEDO01009798.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045107
45490 - 50232
4743