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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009817.1_1012_1131_R

Intron Information:

Intron Rank:
149171
Intron Class:
major
Intron Phase:
Intron Coordinates:
1012 - 1131
Intron Length:
120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCTT
5'SS Class:
strong_major
3'SS Sequence:
TACTTTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
TACATCTTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
75.8
39.8
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
85.7
0.8
0.8
80.1
31.6
Minor 5ss
36
-1.6
3.6
55.8
48.4
Minor BPS
54.8
0.23
1.6
68.99
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027751
Chromosome:
PEDO01009817.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044331
21 - 1636
1616