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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009849.1_103798_106213_F

Intron Information:

Intron Rank:
123891
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
103798 - 106213
Intron Length:
2416

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGCTTT
5'SS Class:
weak_major
3'SS Sequence:
TTTATTTGAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTATTTGAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.2
72.6
39.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
72
0.49
1
70
40.2
Minor 5ss
57.9
0.27
2.4
73.9
42.6
Minor BPS
61.7
0.36
1.4
72.31
33.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016790
Chromosome:
PEDO01009849.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042838
103102 - 106967
3866