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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009854.1_1263_1328_R

Intron Information:

Intron Rank:
129132
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
1263 - 1328
Intron Length:
66

Sequence Information:

Terminal Dinucleotides:
GT-GG
5'SS Sequence:
TGG|GTCACTTAT
5'SS Class:
weak_major
3'SS Sequence:
GGGTCACTTGTGG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAGTTAT
U12 Branch Point Sequence:
TTATGGGTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.9
0.23
1.5
65.8
42.7
Major BPS
73.5
0.58
1.2
63.7
43.9
Major PPT
37.5
-0.7
3.1
47.8
40.6
Minor 5ss
42.4
-0.8
2.7
50.3
46
Minor BPS
38.7
-0.8
3
68.01
48.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016669
Chromosome:
PEDO01009854.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036307
21 - 1343
1323
ENSAPLT00000029053
21 - 1696
1676