Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009854.1_1554_1659_R

Intron Information:

Intron Rank:

129130

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

1554 - 1659

Intron Length:

106

Sequence Information:

Terminal Dinucleotides:

GT-GA

5'SS Sequence:

TGG|GTCAGTTGT

5'SS Class:

major

3'SS Sequence:

GGGTCACTTATGA|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CACTTAT

U12 Branch Point Sequence:

GGTCACTTATGA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.9

0.52

1.3

69.7

43.7

Major BPS

71.3

0.53

61.3

Major PPT

19.9

-1.7

4.1

39.4

Minor 5ss

36.9

-1.5

2.8

41.9

44.6

Minor BPS

45.2

-0.3

55.75

42.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016669

Chromosome:

PEDO01009854.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023207

21 - 1696

1676