Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009854.1_320_369_F

Intron Information:

Intron Rank:

146464

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

320 - 369

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-GG

5'SS Sequence:

GGG|GTTTTTGGG

5'SS Class:

weak_major

3'SS Sequence:

GGACTCAGTTTGG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTGGAC

U12 Branch Point Sequence:

GGATTTTGGACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

52.9

0.07

1.3

44.6

43.1

Major BPS

61.5

0.29

1.4

63.1

44.5

Major PPT

34.6

-0.8

3.1

44.2

42.1

Minor 5ss

34.2

-1.8

2.9

42.1

Minor BPS

51.3

0.12

1.4

65.51

38.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028915

Chromosome:

PEDO01009854.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027042

21 - 1696

1676