About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009868.1_2553_3064_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2553 - 3064
Intron Length:
512

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGCA
5'SS Class:
strong_major
3'SS Sequence:
GCTCCCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTCAT
U12 Branch Point Sequence:
CGAGCCTCATTC
Flanking Amino Acid:
YLSWTSTSPYSTVPSYSSSG
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
71.1
34.7
Major BPS
64.6
0.36
1.3
67.6
40.6
Major PPT
69.1
0.43
0.8
61.8
28.8
Minor 5ss
26.1
-2.7
3.2
32
42.6
Minor BPS
44.1
-0.4
1.8
47.92
42

Associated Gene:

Gene:
PRRX2
Ensembl Gene ID:
ENSAPLG00000008227
Chromosome:
PEDO01009868.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008546
2417 - 3488
1072