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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009872.1_1906_2023_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1906 - 2023
Intron Length:
118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGACCT
5'SS Class:
major
3'SS Sequence:
CCCAAACCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
TTTCCCCCAAAC
Flanking Amino Acid:
VDGSVYKLHPSFKDRFHATV
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
65.1
40.8
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
63.5
0.31
0.9
54.5
35
Minor 5ss
27.8
-2.6
3.3
39.5
45.9
Minor BPS
50.8
0
2
71.02
39.2

Associated Gene:

Gene:
GCK
Ensembl Gene ID:
ENSAPLG00000023543
Chromosome:
PEDO01009872.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037445
15 - 2168
2154