Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009872.1_409_520_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

409 - 520

Intron Length:

112

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTGAGGCTG

5'SS Class:

major

3'SS Sequence:

CCCCCCCCGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTGAC

U12 Branch Point Sequence:

CGGCTCTGACCC

Flanking Amino Acid:

LLRDAIKRRGDFEMDVVAMV

Intron Amino Acid Position:

101

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.5

0.58

60.4

45.8

Major BPS

69.1

0.47

60.7

37.6

Major PPT

62.4

0.28

0.9

57.2

27.1

Minor 5ss

28.5

-2.5

3.3

30.2

42.9

Minor BPS

44.7

-0.4

1.7

48.78

41.1

Associated Gene:

Gene:

GCK

Ensembl Gene ID:

ENSAPLG00000023543

Chromosome:

PEDO01009872.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037445

15 - 2168

2154