Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009872.1_4159_4267_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4159 - 4267

Intron Length:

109

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGAGGACG

5'SS Class:

major

3'SS Sequence:

GTTGTCCCCGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTGAG

U12 Branch Point Sequence:

ACACCCGGCACC

Flanking Amino Acid:

CRQLWDSLGTWDEDEGDAVA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.8

0.61

63.4

42.4

Major BPS

-0.1

1.5

42.6

40.4

Major PPT

73.1

0.52

0.9

66.4

35.7

Minor 5ss

27.6

-2.6

32.9

41.7

Minor BPS

39.4

-0.8

2.3

47.95

41.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029767

Chromosome:

PEDO01009872.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045115

3695 - 5201

1507