Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009874.1_228_314_F

Intron Information:

Intron Rank:

136021

Intron Class:

major

Intron Phase:

Intron Coordinates:

228 - 314

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGGGGA

5'SS Class:

strong_major

3'SS Sequence:

TGTCCCCCCCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATGTCAC

U12 Branch Point Sequence:

CCCATGTCACCC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.2

0.81

0.9

69.2

37.4

Major BPS

66.1

0.4

1.2

69.1

37.9

Major PPT

71.9

0.49

0.8

62.4

34.6

Minor 5ss

23.1

-3.1

3.2

43.5

Minor BPS

35.5

-1.1

2.2

37.66

40.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023274

Chromosome:

PEDO01009874.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017222

21 - 1714

1694