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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009882.1_2045_2150_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2045 - 2150
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
AGTCAATTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTCAA
U12 Branch Point Sequence:
ACTGACTGAAAA
Flanking Amino Acid:
RGGILGDLTSSDVGVELPVI
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
59
0.23
1.1
61.4
36.2
Major PPT
70.2
0.46
1
59
45.5
Minor 5ss
38.8
-1.3
2.8
48.8
47
Minor BPS
47.1
-0.2
1.8
57.11
41.6

Associated Gene:

Gene:
ARR3
Ensembl Gene ID:
ENSAPLG00000030044
Chromosome:
PEDO01009882.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019340
243 - 4268
4026