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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009882.1_707_821_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
707 - 821
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGCG
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTGCCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCAAT
U12 Branch Point Sequence:
GCTGCCCCAATG
Flanking Amino Acid:
NKIVKKIKISVDQITDVVLY
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
68.6
36.5
Major BPS
48.8
-0
1.3
56.3
37.4
Major PPT
75.5
0.57
0.9
73.4
37.1
Minor 5ss
25.3
-2.8
3.1
30.1
43.1
Minor BPS
44.7
-0.5
2
48.92
44.8

Associated Gene:

Gene:
ARR3
Ensembl Gene ID:
ENSAPLG00000030044
Chromosome:
PEDO01009882.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019340
243 - 4268
4026