Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009887.1_2447_3589_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2447 - 3589

Intron Length:

1143

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATCTGT

5'SS Class:

major

3'SS Sequence:

TTCTTTGTCTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AACTAAT

U12 Branch Point Sequence:

TGTTTCTTCCCT

Flanking Amino Acid:

WDELDFGEQQVNELLLQYIR

Intron Amino Acid Position:

544

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.4

0.69

71.6

40.9

Major BPS

77.9

0.69

0.8

75.9

Major PPT

80.4

0.68

0.8

80.4

31.6

Minor 5ss

45.6

-0.5

2.9

65.6

45.5

Minor BPS

45.1

-0.2

3.6

79.89

42.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017215

Chromosome:

PEDO01009887.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047834

960 - 7771

6812