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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009891.1_113499_116238_R

Intron Information:

Intron Rank:
144225
Intron Class:
major
Intron Phase:
Intron Coordinates:
113499 - 116238
Intron Length:
2740

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTCTG
5'SS Class:
major
3'SS Sequence:
TTTCTTTTATCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAA
U12 Branch Point Sequence:
TTTCTTTTATCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
67.2
43.7
Major BPS
76.9
0.67
0.8
77.7
26.1
Major PPT
88.3
0.86
0.8
89.3
25.7
Minor 5ss
44
-0.7
2.8
58.7
45.8
Minor BPS
64.4
0.45
1.5
76.08
35.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024856
Chromosome:
PEDO01009891.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045553
111969 - 116628
4660