Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009906.1_1869_4186_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

1869 - 4186

Intron Length:

2318

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CCT|GCGGGTGGG

5'SS Class:

weak_major

3'SS Sequence:

GGCCCCGGGGCAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGGTGAT

U12 Branch Point Sequence:

CTGCTGGTGATG

Flanking Amino Acid:

SWGDAVLPCFF

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

51.6

0.04

1.4

53.1

41.2

Major BPS

66.1

0.4

1.3

57.1

49.4

Major PPT

-0

1.1

41.7

38.4

Minor 5ss

17.8

-3.7

3.9

30.9

43.1

Minor BPS

35.7

-1.2

2.4

38.08

39.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022306

Chromosome:

PEDO01009906.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020066

18 - 4190

4173