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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009926.1_4614_5707_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4614 - 5707
Intron Length:
1094

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGCACT
5'SS Class:
major
3'SS Sequence:
CATCTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
TGATCCTCACCT
Flanking Amino Acid:
VLKEVLLEFKGDLSLDPDTA
Intron Amino Acid Position:
396

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
71.4
40.3
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
81.8
0.71
0.8
72.9
37
Minor 5ss
36.1
-1.6
2.9
41.9
44.5
Minor BPS
60.1
0.39
1.9
78.32
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029907
Chromosome:
PEDO01009926.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018349
21 - 7237
7217