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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009926.1_4973_5707_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4973 - 5707
Intron Length:
735

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
CATCTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
TGATCCTCACCT
Flanking Amino Acid:
NLRFELENDTGDLSLDPDTA
Intron Amino Acid Position:
407

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
38.7
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
81.8
0.71
0.8
72.9
37
Minor 5ss
35.7
-1.6
3
48.8
47
Minor BPS
60.1
0.39
1.9
78.32
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029907
Chromosome:
PEDO01009926.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038047
21 - 7237
7217