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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009942.1_3453_3539_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3453 - 3539
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCGTCCC
5'SS Class:
major
3'SS Sequence:
TCTCCCCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCCCAC
U12 Branch Point Sequence:
CCAGCCCCACCG
Flanking Amino Acid:
FFIPEDSFIRAWHYTGVCGG
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
66
39.9
Major BPS
45
-0.3
1.2
49.7
35.3
Major PPT
80
0.68
0.7
73.6
24.6
Minor 5ss
29
-2.4
2.9
36.4
40.5
Minor BPS
37.4
-1
2
36.61
45.1

Associated Gene:

Gene:
SERINC4
Ensembl Gene ID:
ENSAPLG00000006569
Chromosome:
PEDO01009942.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006812
21 - 3935
3915