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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009956.1_533_1418_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
533 - 1418
Intron Length:
886

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
CCCCCCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
CCCCCCTGACGT
Flanking Amino Acid:
QQYLNVVTRHRYGRRSSSRG
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
65.3
42.2
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
67.8
0.4
0.7
60.8
21.8
Minor 5ss
28.6
-2.5
2.8
33
41.8
Minor BPS
42.7
-0.4
2
53.41
47.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022452
Chromosome:
PEDO01009956.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032683
21 - 1520
1500