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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009962.1_27056_27200_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27056 - 27200
Intron Length:
145

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCAAAT
U12 Branch Point Sequence:
TCTCCCCCAAAT
Flanking Amino Acid:
RFATTFSQLRELNLEGNLLH
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
52.4
0.06
1.1
58.8
34.5
Major PPT
89.3
0.88
0.6
81.8
30.2
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
49
0.01
2
72.33
43.7

Associated Gene:

Gene:
LRRC20
Ensembl Gene ID:
ENSAPLG00000002003
Chromosome:
PEDO01009962.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001999
25721 - 27300
1580