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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009962.1_54436_55409_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
54436 - 55409
Intron Length:
974

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTGAGTGAG
5'SS Class:
major
3'SS Sequence:
TCTTCCATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
CGCTCTTTAACC
Flanking Amino Acid:
LLQRCKEDFVDQITGGRPLA
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1
62.1
38.7
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
84.5
0.78
0.8
81.8
28.5
Minor 5ss
27.9
-2.5
3
27.6
37.5
Minor BPS
71.8
0.66
1.3
70.5
41.3

Associated Gene:

Gene:
ASCC1
Ensembl Gene ID:
ENSAPLG00000007456
Chromosome:
PEDO01009962.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007746
52600 - 61453
8854