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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009962.1_60176_60795_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
60176 - 60795
Intron Length:
620

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGCCTC
5'SS Class:
major
3'SS Sequence:
TTTTTGCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTCCAC
U12 Branch Point Sequence:
CTCTCTTCCACT
Flanking Amino Acid:
CRVEVPSPLYKYVIGKKGET
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
66
40.1
Major BPS
55.1
0.13
1.3
67.8
38.2
Major PPT
86.2
0.81
0.8
77.9
36.6
Minor 5ss
38.7
-1.3
3.2
51.2
39.7
Minor BPS
50.7
0.1
2
71.32
46.1

Associated Gene:

Gene:
ASCC1
Ensembl Gene ID:
ENSAPLG00000007456
Chromosome:
PEDO01009962.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007746
52600 - 61453
8854