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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009962.1_62200_63318_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62200 - 63318
Intron Length:
1119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCCC
5'SS Class:
strong_major
3'SS Sequence:
CTCCCTCTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
ACTTCCTAACCC
Flanking Amino Acid:
RRLRQAVRAPRLGRAEMAAS
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
66.5
39.1
Major BPS
72
0.55
1
71.8
31.4
Major PPT
77.3
0.62
0.7
72
26
Minor 5ss
26.6
-2.7
3.1
33.5
41.9
Minor BPS
56
0.17
2
68.2
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007834
Chromosome:
PEDO01009962.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008126
61649 - 65220
3572
ENSAPLT00000042634
61649 - 69404
7756
ENSAPLT00000038411
61649 - 65700
4052
ENSAPLT00000031966
61649 - 69605
7957
ENSAPLT00000017540
61649 - 65120
3472