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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009962.1_64063_64419_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
64063 - 64419
Intron Length:
357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGCGCC
5'SS Class:
major
3'SS Sequence:
ACTCCTCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
CACCTTTGAACT
Flanking Amino Acid:
VASTLKQVKHDQQVARMEKL
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
65.5
42
Major BPS
74.8
0.62
1
67
39.8
Major PPT
72.3
0.5
0.8
65.9
29.4
Minor 5ss
38.1
-1.3
3.3
52.1
44.7
Minor BPS
50.7
0.1
1.4
62.67
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007834
Chromosome:
PEDO01009962.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038411
61649 - 65700
4052
ENSAPLT00000017540
61649 - 65120
3472
ENSAPLT00000008126
61649 - 65220
3572
ENSAPLT00000042634
61649 - 69404
7756