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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009962.1_64487_65621_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
64487 - 65621
Intron Length:
1135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAAGCC
5'SS Class:
major
3'SS Sequence:
TCGGCGACTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TGTATTTTAACT
Flanking Amino Acid:
LVEELEADEWSSATSGLKPR
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
60.4
37.2
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
64.3
0.32
1
58.9
41.8
Minor 5ss
30
-2.3
3.5
42.6
44.4
Minor BPS
74.3
0.84
1.2
85.02
35.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007834
Chromosome:
PEDO01009962.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038411
61649 - 65700
4052