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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009962.1_64487_68848_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
64487 - 68848
Intron Length:
4362

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAAGCC
5'SS Class:
major
3'SS Sequence:
TTGTCCTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
TTGTCCTCCACA
Flanking Amino Acid:
LVEELEADEWRARLGRPGLA
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
60.4
37.2
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
78.4
0.64
0.8
72.8
32.1
Minor 5ss
30
-2.3
3.5
42.6
44.4
Minor BPS
60.7
0.33
2
75.56
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007834
Chromosome:
PEDO01009962.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042634
61649 - 69404
7756