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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009962.1_77336_78097_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
77336 - 78097
Intron Length:
762

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCAGGAT
U12 Branch Point Sequence:
TGGTGCTCCACT
Flanking Amino Acid:
RQDRREHQGDGGLGLFVQLM
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
74.4
36.1
Major BPS
44
-0.3
1.4
37
40.7
Major PPT
75.7
0.58
0.8
69.7
31.1
Minor 5ss
34.5
-1.8
3.3
44.7
43.5
Minor BPS
46.4
-0.2
2.4
68.77
47.7

Associated Gene:

Gene:
DNAJB12
Ensembl Gene ID:
ENSAPLG00000007851
Chromosome:
PEDO01009962.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008182
73199 - 83868
10670