Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009962.1_82601_83735_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

82601 - 83735

Intron Length:

1135

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTGAGGGGG

5'SS Class:

major

3'SS Sequence:

CCTCCCGCCGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTAAC

U12 Branch Point Sequence:

CCCCGTTTAACT

Flanking Amino Acid:

QRLYPTPRARALLEELDKEQ

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.4

0.55

55.1

43.9

Major BPS

71.9

0.54

1.2

75.6

36.6

Major PPT

67.6

0.4

0.8

60.9

29.2

Minor 5ss

23.7

-3

3.3

29.1

43.5

Minor BPS

51.2

0.12

1.8

64.23

46.6

Associated Gene:

Gene:

DNAJB12

Ensembl Gene ID:

ENSAPLG00000007851

Chromosome:

PEDO01009962.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008182

73199 - 83868

10670