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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009970.1_1124_1299_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1124 - 1299
Intron Length:
176

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCGCCG
5'SS Class:
major
3'SS Sequence:
TGCCTCGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
CCCTCCTGATGC
Flanking Amino Acid:
LEGEELELAKVAVLLLYHSS
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.9
0.35
1.2
50.5
45.8
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
75.1
0.57
0.9
68.6
37.2
Minor 5ss
42.7
-0.8
3.1
57
47.3
Minor BPS
44.7
-0.4
2
50.27
46.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029879
Chromosome:
PEDO01009970.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042289
891 - 3468
2578