Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009970.1_1381_1492_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1381 - 1492

Intron Length:

112

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACTGCCC

5'SS Class:

major

3'SS Sequence:

TCCTCGCGTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGAC

U12 Branch Point Sequence:

AGCTGCTGACCC

Flanking Amino Acid:

DWNEFDYQTQVELANILKFV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.6

0.42

1.1

54.4

42.9

Major BPS

66.3

0.4

1.1

41.8

Major PPT

70.8

0.47

64.7

36.4

Minor 5ss

-2.2

3.4

43.3

43.9

Minor BPS

44.7

-0.4

2.1

54.19

43.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029879

Chromosome:

PEDO01009970.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042289

891 - 3468

2578