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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010004.1_1815_1889_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1815 - 1889
Intron Length:
75

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCGTC
5'SS Class:
strong_major
3'SS Sequence:
CATCTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
GTGGCACTGATG
Flanking Amino Acid:
PDLQQPVTGQGPQEFRALQL
Intron Amino Acid Position:
352

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.7
34.4
Major BPS
71.2
0.53
1
61
37.5
Major PPT
72.5
0.51
0.8
65.9
29.7
Minor 5ss
35.5
-1.7
3.5
49.2
47.3
Minor BPS
41.6
-0.8
2
44.89
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024295
Chromosome:
PEDO01010004.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047202
21 - 3764
3744