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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010004.1_3586_3656_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3586 - 3656
Intron Length:
71

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTTGG
5'SS Class:
major
3'SS Sequence:
TGCCTCCCCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTCAC
U12 Branch Point Sequence:
CCGGCCTCACGC
Flanking Amino Acid:
TPRDTLACSQGLACRLLDAD
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
65.8
42.7
Major BPS
54.7
0.12
1.2
59.2
39.1
Major PPT
67.7
0.4
0.8
62.2
28.7
Minor 5ss
32.8
-2
3.1
40.1
46
Minor BPS
39.5
-0.8
2
41.22
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024295
Chromosome:
PEDO01010004.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047202
21 - 3764
3744