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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01010004.1_785_861_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
785 - 861
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GGTTATTTAATC
Flanking Amino Acid:
KSLRAGYGNEAPLRGRRMLL
Intron Amino Acid Position:
509

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.8
79.3
31.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
78.2
0.63
0.7
72.8
25.4
Minor 5ss
33.2
-1.9
2.8
39
46.4
Minor BPS
63.8
0.41
1.5
68.91
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024295
Chromosome:
PEDO01010004.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047202
21 - 3764
3744